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Large repositories at the National Center for Biotechnology Information (NCBI) and European Bioinformatics Institute EBII) archive raw data of arrays produced with different platforms [ 1- 3].
The hierarchical cluster analysis was repeated, incorporating the data of arrays 1 and 5, which were hybridized later than the other 6 arrays.
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The data of array scanning were shown in Additional file 2. Statistical analyses, using two-group T-test based on the normalized expression levels, were performed to determine the differentially expressed genes.
We present data on arrays of highly uniform InGaAs quantum dots fabricated in this manner.
The consolidated data of 341 arrays were normalized using the SCAN algorithm before network construction and biclustering analysis, as this is a method that performs well for cross comparison52.
The data of six arrays were normalized to account for variability in hybridization for probe pairs and other hybridization artefacts.
Summarised expression data of all arrays was subjected to Lowess normalization (f = 0.1) [ 69] to remove non-linearities in log-log plots of abundance values from different arrays.
http://www.msstats.org/ Gene Expression Omnibus, a genomics data repository of array- and sequence-based data.
Examination of the data of individual array experiments revealed that K8 and K18 levels are very tightly correlated (Figure 2B).
The raw data of miRNA array can be downloaded from the National Center for Biotechnology Information-Gene Expression Omnibus (GEO) (GEO GSE32906).
Gene expression omnibus (GEO) from NCBI is a data repository of array- or sequence-based gene expression profiles.
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