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In each run, a new HSI synthetic data is generated with the same parameters (J, I, ξ, ι, SNR), when the endmembers are selected randomly from the library.
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The 100 bp paired-end data were generated with the HiSeq2000, whose average insert size is 300 bp and depth of coverage is 45x for each sample (all the data were generously provided by Illumina Inc .. Table 2 shows the summary of the predicted HLA types of the CEU trio.
But as ever more data was generated with the rise of the internet, the mainframe found itself back in demand.
These data were generated with the Similarity report and the Scaffold report of SA2.
Raw image data were generated with the Illumina Bead Scanner.
Respective background free time-domain data were generated with the help of the same package.
Sequence data were generated with the ABI PRISM 3100 DNA Analyzer (Applied Biosystems).
Whole transcriptome paired-end data was generated with the HiSeq 2000 (Illumina, San Diego, CA).
Clones were selected for additional sequencing to close gaps, and additional sequence data was generated with the 454 platform.
For each area pair, artificial data were generated with the correlation structure of the local connectivity via Cholesky decomposition.
SNP genotype data were generated with the Illumina HumanCytoSNP-12v2 SNP chip and linkage (identity-by-descent [IBD] sharing) analysis was performed with MERLIN 11 (v11112).
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