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Experimental data from various species have revealed crucial roles for mechanotransduction in organ development and a plethora of physiological activities.
For example, gene expression profiling was combined with functional genomic and proteomic data from various species to generate a network containing 118 genes linked by 866 potential functional associations for breast cancer [21].
Given the dynamic nature of the NextBio system where the distribution of data from various species, platforms, data types, and semantic categories changes on a continuous basis, it is not obvious at the outset what the relative contributions of each of these factors should be toward determining an optimal overall scoring function for determining top ranked concepts.
Subsequently, we apply our method to both synthetic and next generation sequencing data from various species.
On the other hand, training data from various species could potentially limit the ability of a naive Bayes classifier to identify DE genes.
The analysis was facilitated by Dr. Zompo which has been designed to manage and explore seagrass ESTs and genomic data from various species.
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Then, they combined gene expression profiling data with functional genomics and Proteomics data derived from various species to model the heterogeneous protein network.
PolyCat was developed and tested on data derived from various species of cotton (genus Gossypium).
Our data demonstrate that the state of cellular differentiation of cardiomyocytes from various species is not evolutionary conserved.
Other, nonplant mid-SUN-domain proteins, largely uncharacterized, from various species including fungi, flies, worms, and mammals can be identified by sequence-search analyses (data not shown).
This finding also indicates that data published in in vitro experiments using cells of various animal species have to be interpreted with caution since chondrocyte metabolism from various species are inherently different.
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