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We sought to compare our analysis of matrisome expression in planarian SCS data to data from other organisms.
This ratio seems low when compared to data from other organisms [18].
The extent of overlap between our data and data from other organisms was determined.
In keeping with data from other organisms, many of these are evolutionarily conserved (see below).
However, our approach is readily applicable to similar data from other organisms.
MicroRNA expression data from other organisms confirmed the results that we obtained in the Northern analyses of our predicted C. intestinalis miRNA sequences [ 22- 26].
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While we have focused our efforts so far on Drosophila, some data sets from other organisms have been included as well.
Northern analysis of a set of genes selected from the EST collection revealed UPR-like up regulation of a group of genes expected to be UPR up-regulated based on data obtained from other organisms, e.g. bip1, pdi1, ero1, pmr1 and sec61 or belonging to functional categories UPR up-regulated in other organisms sec53, ypt2, ste24, erv29 [ 2, 9, 40] (Fig. 2).
The fact that it works well with data in databases from other organisms is of course a reason to publish the paper, so that others will have access to these methods and can also do this analysis.
The correlation between the structural architecture and the bifunctional activity is discussed and compared with data obtained for KatGs from other organisms.
Protein and nucleotide sequence data of β-CAs from other organisms were obtained from the public databases at NCBI (http://www.ncbi.nlm.nih.gov/entrez/) or by BLAST searches of the complete sequenced genomes at the Broad Institute (http://www.broad.mit.edu/annotation/fungi/fgi/).edu/annotation/fungi/fgi/
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