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First the SNP array data are phased to build a backbone (or 'scaffold') of haplotypes across each chromosome.
Second, missings can be imputed at the time the data are phased (Delaneau et al. 2014) or by the use of external reference panels (Howie et al. 2009).
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Diffraction data were phased by using our structure of PBP2 from H. pylori as a model in a molecular replacement experiment.
The structures are homologous to that of wt-KaiC and diffraction data were phased using the molecular replacement technique and the KaiC structure with PDB ID code 3DVL [19] [19].
Marker data were phased and imputed with Beagle 3.3 [ 17].
Occasional missing genotypes were imputed and the genotype data were phased using Beagle v3.3.1 [ 9].
After Fourier transformation, the data were phased and subjected to baseline correction.
The anomalous data was phased using HKL2MAP (ShelxC/D/E); 14 of the 16 expected selenium sites were identified.
Data were phased in SHELX using 10 sites to 3.5 Å from the SeMet data set, which yielded an interpretable electron density map.
The PIV data are phase averaged in the recirculation region and the convection speed of the vortices is characterized.
First, complex image data were phase-corrected using one of the scans (usually the scan with the shortest inversion delay) as a phase reference.
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