QIIME [21], ESPRIT [22] and Mothur [20] are high-performance workbenches for data analysis, but have significant dependencies.
The quality of FASTQ genome resequencing data delivered from the University of Utah was checked using the FastQC program; data passing the quality control were imported into CLC Genomics Workbench 5.1 for data analysis to identity the potential small genetic changes such as SNP and Indels.
A data analysis workflow was generated in CLC Genomics Workbench to automate methylation data analysis (Additional file 4: Figure S1).
Oqtans provides a versatile analysis workbench for RNA-seq data comprising tools suitable for basic and advanced analysis tasks (see Supplementary Table S1 for a current list of Oqtans tools and Supplementary Table S2 for supported file formats).
Other European institutes including ESRF, ILL and PSI have shown interest in using GumTree as their workbench for instrument control and data analysis.
Transcripts were analyzed and coded to ascertain common themes using the qualitative data analysis software program ATLAS.ti (Version XX, The Knowledge Workbench. Berlin, Scientific Software Development Inc).
Summary: The Galaxy platform has developed into a fully featured collaborative workbench, with goals of inherently capturing provenance to enable reproducible data analysis, and of making it straightforward to run one's own server.
All analyses used Oracle's MySQL Workbench 5.2.47 CE [ 46] for data storage, RStudio [ 47] version 0.97.449 for data analysis, and Microsoft Excel [ 48] for table output.
Software developed with tools in the ISAW workbench provides graphical manipulation of three-dimensional arrays of data in histogram coordinates and in reciprocal space, and user-friendly wizards for routine data analysis.
This model is used to develop a risk analysis workbench in an industrial design application system.
Waterhouse, A. M., Procter, J. B., Martin, D. M., Clamp, M. & Barton, G. J. Jalview version 2 a multiple sequence alignment editor and analysis workbench.
