The final resolutions of the refined structures were estimated using FSC (Fourier shell correlation) 0.5 cutoff criterion (Fig. S7).
In our analyses, some models' initial RMSEA values slightly exceeded the conventional cutoff criterion of.10, but improved after further restriction.
This cutoff criterion is made in the context of unavailability of a well-established database to define the rate of sequestration of carbon by coconut palms.
It is applied to the power operator the decomposition in eigenvalues and eigenvectors, becoming possible to compute the numerical equivalent to the supersonic intensity, called here as useful intensity, after applying a cutoff criterion to remove the non-propagating components.
The majority of metrics, including all metrics in this paper, are dependent on the value of this cutoff criterion χ since this criterion defines which compounds are predicted to be active and non-active.
The default p-value cutoff criterion was at 10−5 (the effective genome size was set to 2.2 Gb).
Using a cutoff criterion of 2.0-fold change and 95% confidence, we detected significant changes for 124 proteins, with 66 proteins being upregulated in the IrrE-expressing strain.
With PCO-MC, Type I error control is accomplished by applying a post-analysis cutoff criterion to distinguish correct from incorrect inferences.
For the purpose of computational efficiency, we first tested how promising the p-value looks after each shuffle based on the pre-specified cutoff criterion (p-value <0.025), then jumped into the next path if the criterion was not met.
(See "Determination of cutoff criterion" under " Data analysis" section below).
The values are based on the 0.143 cutoff criterion.
