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Both CHASM and VEST provide P-values and false discovery rate estimates to help the user establish a score cut-off for accepting predictions.
However, for non-coding RNAs, this correlation is much weaker and in fact, below our footprint RPKM cut-off for accepting translation, a number of lncRNAs can be present in the polysomal fraction in high amounts, yet do not give rise to ribosomal footprints.
We obtain the RPKM and coverage values from these canonical 3'-UTR reads, and use their 90th percentile value as preliminary cut-offs for accepting translation of coding sequences.
We obtained the RPKM and coverage values from this canonical 3′-UTR signal, and use their 90th percentile values as preliminary cut-offs for accepting translation of coding sequences.
The commonly accepted cut off of 0.15 for the pairwise variation was used to assess the minimum number of reference genes required for accurate normalization [ 9].
There is no universally accepted cut off of Ri for good agreement, as it is appreciated that this depends on the number of subjects studied and the context in which the decisions based on the instrument will be made [ 21].
Cut-off score for accepting individual MS/MS spectra was set at zero.
Less commonly, a cut-off point for accepting matches is estimated using statistical models of probabilistic linkage, circumventing the need for clerical review [ 12].
Cut off the block for the trigger.
Supplementary Table S1 suggests that, in the LifeLines case, 82% similarity is a good cut-off for automatically accepting the recommended code because 100% of the matches produced by the system were judged by the human curator to be correct matches.
Funding for the project is cut off.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com