Sentence examples for cut off applied from inspiring English sources
For PCA clustering, genes that were differentially expressed in any of the three seedling treatments relative to the control (empirical Bayes test, no minimum fold change cut off applied; 11057 contigs) were grouped based on condition using the 'cluster.samples' function in smida (R v.2.7.1).
The data was from 3 biological replicates, statistically filtered (P = 0.05) and a 2-fold cut off applied.
All differentially expressed genes in a given dataset that are also present as nodes in the master network form a subset The methods described here do not take individual expression levels into account but instead assume that transcriptionally altered genes have been determined using a suitable cut off applied to the measured expression change.
Importantly, the grid scores of I cells in all network configurations are less than the corresponding E cells and in many network configurations are <0.4, which is below the cut off applied by Buetfering et al. to identify grid firing.
An inclusive, multi-step approach to identifying differentially expressed genes was used to ensure conservation of gene expression between ligand or species could not be attributed to strict cut offs applied during screening.
Five percent of the data was flagged for Rfree with neither a sigma nor a low-resolution cut-off applied to the data.
Considering the confidence score cut-off applied, the configuration of the network produced from SFSP-Max estimation is the same as that derived using the scheme based on the scoring function of domain sharing described by equation (1).
Given the stringent significance cut-off applied in this study, we expect that all 16 associations represent true positives.
The cut-off applied to the CI + PI index can also be selected to leave specificity unchanged when using EIS as an adjunct to colposcopy.
The overall accuracy of colposcopy when used with EIS as an adjunct was assessed by varying the cut-off applied to a combined test index.
By adjusting the cut-off applied to the EIS measurement specificity or sensitivity can be significantly improved in comparison with colposcopy alone.
