The customizable input and output formats are complemented by highly effective and efficient biology-relevant analytics available in Argo.
Output parameters are customizable, but for these analyses, an individual gene was considered to belong to the accessory genome if ≥ 50% of its sequence was contained within the coordinates of an accessory region.
We describe here the functionality of ADAPT 5 Model Evaluation Graphical Toolkit (AMGET), an R-based package, which uses base R graphic functions to generate customizable displays from ADAPT 5 output datasets.
Unlike the other algorithms, which only output sites of interest above particular, customizable thresholds, JSM2 includes a line in the output file for every single site in the input BAM files regardless of their somatic or LOH probability scores.
METANNOGEN is highly customizable with respect to the content of the SBML output file, additional data-fields, the graphical input form, highlighting of project specific search terms and dynamically generated Web-links.
The simple interface software included with the Hauntbox allows users highly customizable control of up to 6 inputs and 6 outputs without the doing any technical heavy lifting.
Additionally, this frequency would be easily customizable for potential multi-frequency analysis - by simply modifying the output compare register, one could easily generate dfferent frequencies of square waves.
The automated QSAR modeling framework is not a black-box prediction system, rather it is an extensible and highly customizable tool to develop the robust predictive models and provide the output of all modeling task for the diverse application and reproduction of historical predictions.
DNAPlotter (Carver et al., 2009) generates interactive, high quality, customizable circular and linear maps, but does not support SVG image output, and cannot save the customizations applied to a genome map for later use.
