The online repository (http://mulvdb.org) allows researchers studying lymphoid malignancies to query custom subsets of data for genome-wide associations of a gene of interest with tumor type and mutation status, and create custom tracks for the UCSC genome browser45.
A custom data subset for MMTx was created, making it faster and significantly improving the recall to 0.896 with a non-significant reduction in precision.
The 809 clusters were compared, using the programs BlastX, BlastN, or RPSBLAST [ 32], to the nonredundant protein database of the National Center of Biological Information (NCBI), to a gene ontology database [ 33] to the conserved domains database of the NCBI [ 34], and to a custom prepared subset of the NCBI nucleotide database containing either mitochondrial or rRNA sequences.
For identification of HSA peptides, tandem mass spectra were processed in BumberDash Tools, version 1.4.110, and searched by Myrimatch algorithm with a custom-built subset database originated from Homo_sapience_GRCh37-59_Cntm_r (2010_11-18).
To explore the phylogenetic conservation of A. crassus TUGs, they were classified as conserved across kingdoms, conserved in Metazoa, conserved in Nematoda, conserved in Spirurina or novel to A. crassus by comparing them to custom database subsets using BLAST (Table 3).
Researchers can perform a simple search using a keyword, or employ multiple column filters for a custom-made data subset.
The best supergraph can be synthesized, and the corresponding subset of custom instructions can be included in the extensible processor design.
There's a networking issue affecting a subset of custom domain blogs- there will be a post up on staff shortly but the issue has been mostly resolved and performance is being restored.
A custom microarray identified a subset of miRNAs that were differentially down-regulated in livers of SHP−/− mice, which exhibited a 2-fold or greater decrease in expression (Figure 1a).
