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Specifically for SVRM, SVM-RFE the user could also specify custom parameters.
The best thing is that it is possible to configure predictive scaling based on custom parameters, which can be used to predict the queue length of an SQS queue.
Custom parameters estimated by e.g. expectation maximization over alignments of a given divergence range will supposedly perform even better.
Custom parameters: additional commandline options can be provided as "Custom parameters".
This used custom parameters detailed in Supplementary Table S1.
Amino acid equivalences for motif ambiguity can be set using the custom parameters box.
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Default CAP3 settings include -p 90 -h 20; the custom parameter settings used were -p 85-h9090.
Because the tools involved in the RAF pipeline all rely on automatic parameter learning, RAF allows the possibility of learning custom parameter sets well-suited for predictions on particular RNA families.
We aggressively trimmed, corrected, and discarded lower quality reads and assembled those satisfying our quality control criteria using SOAPdenovo (Li et al. 2010) and a custom parameter optimization strategy (see Materials and Methods).
To assess genome-wide changes in methylation patterns for each sample across a given experiment, a custom parameter termed the global methylation indicator (GMI) was calculated as previously described [ 8].
Begin a new Wall Schedule (View-New-Schedule/Quantities) and add the fields: Type, Length, Area and the custom parameter Limiting Ht.
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