Sentence examples for cumulative length plots from inspiring English sources

The COMPASS program also produces cumulative length plots (CLPs) that display the full distribution of a set of sequence lengths.

COMPASS [ 41] is a Perl script that uses Lastz [ 58] to align assembly scaffolds to a reference, after which the alignment is parsed (using SAMTools [ 75]) to calculate alignment and coverage island lengths (see Figure  7), which are used to create cumulative length plots (e.g., Figure  10), as well as to calculate coverage, validity, multiplicity, and parsimony metrics.

Bp: Base pair; CEG: Core eukaryotic genes; CLP: Cumulative length plot; dnGASP: De novo genome assembly project; FRC: Feature-response curves; GAGE: Genome assembly gold-standard evaluations; GAM: Genomic assemblies merger; NGS: Next generation sequencing; Nt: Nucleotide; VFR: Validated fosmid region.

HGAP2's superior performance relative to the other methods tested was further supported by plots of the cumulative length of the assembly as a function of contigs sequenced.

To compare the scaffolding results for the original dataset and the subset in more details, three figures provided in the QUAST report, i.e., the cumulative length of scaffolds, the N x plot of the largest scaffold sizes, and the GC% of scaffolds, are listed as Additional files 9, 10, and 11 respectively.

The median cumulative length of NOSVA was 19.5 [3 57] h.

The cumulative length in DPPM is defined as (3).

Patients were categorized by the number of gaps in therapy and the cumulative length of gaps.

The feature has a cumulative length of about 80 mile.

From these data, cumulative length of use and cumulative call time were calculated.

The cumulative length of the contigs was 25,048,392 bp.