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SS18-2 is a weedy (O. sativa) and EM93-1 is a cultivated line of rice, and both lines are semidwarf in plant height.
The potato reference genome was a diploid rather than a full cultivated line, but most mRNAs or ESTs were from tetraploid cultivars.
The previous research identified several QTL for seed dormancy (qSD) in a primary segregating population (BC1F1) developed from the cross between a weedy and a cultivated line of rice (Gu et al. 2004).
In addition, eight of the SNP locus outliers are located around 1 Mbp distant from a QTL mapped in a population bred from a cross between a wild accession and a cultivated line [ 59- 62].
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Conventional disease resistance breeding is hard sledding, time-consuming, blindness compared with MAS which offers a powerful strategy to transfer genes from exotic germplasm into cultivated lines.
A subset of 60 cultivated lines from the diversity panel was selected for clone development (identified in Additional file 1).
Such regions are expected to show higher frequencies of polymorphism than the other regions, which originate from cultivated lines.
Non synonymous to synonymous ratios ranged from 1.34 on average in the four cherry tomato lines to 1.48 on average in the four cultivated lines.
Although genome-scale changes in heterozygosity were not observed within cultivated lines, there has been clear selection of alleles for traits relevant to specific market classes.
Those traits identified as polymorphic in the crosses between wild and cultivated lines were examined for segregation in this RI population (Table 5).
Epidemics of late blight in the mid-1800s also reduced the number of cultivated lines that could be used for effective breeding.
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