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Pairwise estimates of θ ranged from 0.61 to 0.83 between S. pimpinellifolium and the four cultivated groups of S. lycopersicum (Table 2) indicating a high level of differentiation between cultivated tomato and this wild relative.
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The molecular diversity decreased from wild to cultivated groups, whereas the number of polymorphisms dropped only for S. l. esculentum.
In contrast, W2, W3 and W5 did not cluster with any of the cultivated groups.
Of the six novel genes that were present in at least one of the cultivated groups, one (novel_seq4_GLEAN_10000166) was present at high frequencies in all genotype groups except S. propinquum.
Further, cultivated groups sub-divided into desi and kabuli type of chickpea.
The low genetic diversity of this cultivated group [ 13, 14] did not justify an intensive sampling.
In the cultivated group, desi's contained the largest number of unique alleles (297) followed by kabuli (104) and pea-shaped (4).
The cluster closest to the cultivated group contained both S. viarum and S. sodomaeum, with a mean genetic differentiation of ~50% from the cultivated germplasm.
This loss could be attributed to the shifting cultivation practice where the patches of moderate size are cultivated by group of families.
Interestingly, except for sh4, these domestication-related genes appear to have been fixed only in some local groups of cultivated rice [19].
Thus, the transcriptome comparisons between inoculated and non-inoculated groups of cultivated and wild rice indicate that the expression of JA, ET and chitinase biosynthesis-related genes, and some WRKY TFs encoding genes, is more highly up-regulated in wild rice than in cultivated rice in response to M. oryzae.
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CEO of Professional Science Editing for Scientists @ prosciediting.com