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Open image in new window Figure 1 Inference of cvhRNA cross-regulation through miRNA response elements.

Hepatocyte differentiation is achieved through a complex network of cross regulation between transcription factors, especially between HNF1α and HNF4α [ 20].

Data indicate cross-talk between Ca2+-dependent and -independent ABA-activation of SLAC1 which may be mediated through a combination of protein kinase cross regulation and additive activation via differential affinities for SLAC1 phosphorylation sites by OST1 and CPKs.

Here we examine four potential mechanisms of TF/TF interaction; physical interaction, transcriptional cross-regulation, signaling-based cross regulation, and co-occupancy of regulatory DNA.

This cross regulation has generally focused on the role of both pathways in regulation of transcription.

DOI: http://dx.doi.org/10.7554/eLife.02863.017 10.7554/eLiFigure63.018 Figure 4 figure supplement 3. Cross regulation and second-order cross regulation in yeast and human.

DOI: http://dx.doi.org/10.7554/eLife.02863.030 10.7554/eLiFigure63.031 Figure 7 figure supplement 2. Cross regulation and second-order cross regulation in cancer.

The Be1-promoting effect of IFN-α along with the resulting regulation of T cell responses through cross-regulation of Be1/Be2 and Th-1/Th-2 subsets, could be a key factor in the beneficial and deleterious effects of IFN-α.

Using network analysis and visualization, we uncover cross-regulation of angiogenesis-specific genes through three key transcription factors in normal and cancer conditions.

Topological analysis of the complete network also suggests cross-regulation of angiogenesis-specific genes through SP3, NFκB1 and E2F1 in the normal and ovarian cancer networks, and we hypothesize that deregulation of these angiogenic genes may be associated with oncogenesis.

Although the underlying mechanism of action is not clear, our recent studies show that Rg1 can exert its nongenomic effects by cross-regulation of receptor tyrosine kinases through a GR-dependent, ligand-independent mechanism [ 27].