Furthermore, GiSAO.db contains two types of orthologue data: orthologue data provided and updated by Affymetrix from cross reference tables linking Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Mus musculus and Homo sapiens facilitate comparative genomic analyses, as well as orthology data computed and entered manually.
The nomenclature of ITS1 and ITS2 may differ (for example ITS1 type C1 equals ITS2 type C1, ITS1 type C2 refers to ITS2 type C3) and a cross-reference table is provided (see Table 1).
The lists of detected peptides were converted to a list of corresponding unique genes using the cross-reference table provided by NCBI (ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2accession.gz).nih.gov/gene/DATA/gene2accession.gz
The correct prefix is determined by using the PSI-MOD ID to select a prefix from a cross-reference table (http://wiki.reactome.org/index.php/Systematic_Peptide_Names).org/index.php/Systematic_Peptide_Names
The GeneIDs for hits matching quality criteria were retrieved using UniProt's up_idmapping cross-reference table (ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/, last accessed September 16, 2014).
Future consideration of these maps may involve integration of the SNOMED CT terminology into the application interface or in a cross-referencing table.
Styles, cross-references, tables, figures, outline editing, table of contents, PDF export and Dropbox/WebDAV syncing.
This includes naming conventions, source system definitions, hard and soft rules, metadata for staging areas, cross-reference tables, and access control lists.
Rice orthologs were mapped onto interactome data using a cross-reference tables assembled from identifiers retrieved from ENSEMBL, The Arabidopsis Information Resource (TAIR; Swarbreck et al., 2008) and The Institute for Genomic Research (JCVI; http://www.jcvi.org; formerly TIGR).
