Diversity and Evenness profiles, however, fulfill by construction this requirement (Fig. 1c) and therefore enabled us to perform cross-individual comparison of entire immune repertoires.
Individual comparisons were analyzed using chi-square cross tabulations and the corresponding Fischer exact test, which determined the likelihood quotient.
Technical replicates were employed for most of the microarray data; however, as average fold-change and overall fold-change data were utilized for cross-platform comparison, individual sample variation within the RNA-Seq data should have minimal impact on the overall results.
While a large number of genes were DE in individual cross-species comparisons, only a small number of these differences could be attributed to changes in an individual lineage.
This resource not only facilitates unified storage for lists of proteins identified during AP-MS experiments, but also allows cross comparison of individual datasets, and extraction of information difficult to mine otherwise.
We performed a cross sequence comparison analysis by blasting individual sequence of all the genes significantly differentially regulated by PPV in infected Arabidopsis leaves against 2,156 uniEST sequences derived from PPV-infected P. persica leaves [ 64].
The paired t-test offered a statistical method in which individual and cross group comparisons could be conducted.
In order to obtain meaningful estimates of dN and dS on the scale of individual genes by cross-species comparison, the divergence between the analyzed species should not be too low.
Cross comparison between tumours from the 29 individuals gave us 3248 (pairing up each tumour with those from other individuals gives 2 × 29 × 2 × 28 = 3248 combinations) pairwise comparisons of non-recurrent cases.
2 Studies that are on individual language description, contrastive analysis, cross-linguistic comparison or generalisation.
By ignoring information about variation at between- and within-individual levels, this technique impedes cross-study comparison of results, ignores data useful for future study design, and hinders the analysis of cross-level interactions.
