Sentence examples for criterion of alignment from inspiring English sources

For each iteration, the criterion of alignment length Taln was incremented by 30 bp if Taln was less than or equal to 300 bp.

This template is common to all CAPs investigated and was used as an anchoring criterion of alignment and refinement thorough the rest of this study.

Whole-genome comparisons, particularly between distantly related genomes such as human and fish, fail to identify and align all the orthologous sequences due to the stringent criterion of local alignment algorithms.

These were selected in the chicken 2004 assembly with the UCSC browser using the criterion of an alignment with the region in HSA1 between 144 160 Mb.

In addition, we used the column score where the percentage of correct columns in an alignment is the criterion for alignment quality.

To ensure that all results are robust to inclusion criteria, we also used the less restrictive criteria of 50% alignment overlap and 40% amino acid sequence identity.

Manual annotation under stringent criteria of sequence alignment with other dimorphic fungi gene sets allowed us to ascribe a putative biological function to many of those genes.

Parsing of BLASTx results was done with the criteria of an alignment length of at least 34 amino acids [ 31] and a minimum of 35% identity, as suggested by the Gene Ontology Consortium (http://www.geneontology.org/GO.annotation.SOP.shtml).org/GO.annotation.SOP.shtml

Both the libraries were annotated by the blastX program against the Uniprot database, at criteria of 50% alignment length, and evalue of 1 × 10-10 (Additional file 13; worksheet 1 and 2).

We have applied stringent criteria for generation of alignment and also have incorporated paired end reads for identification of genuine SNVs from noise.

When reexamining the published sequences from McGrath et al.[ 23] and Destables et al.[ 55] we noticed that when using this strict criterion of requiring an alignment until the end of the C-terminus of a known protein and only considering as potential stop codon the first codon 3' of the protein alignment, also in these sets TAA was the only stop codon that could confidently be assigned.