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Variant sites were filtered based on the following criteria: Mapping quality above 30, site quality score above 30, at least four reads covering each site with at least two reads mapping to each strand but with maximum depth of coverage 200, at least 75% of reads supporting site (DP4), allelic frequency (AF1) of 1. Sites which failed these criteria in any strain were removed from the analysis.
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Fuzzy criteria maps corresponding to each of these criteria were produced in Geospatial Information Systems GISS) environment.
These three systems can provide individual results between the criteria map and each learner map.
A criteria map is the most popular tool to use in an automatic assessment that can influence the effective assessment.
The criteria map is constructed by an expert and is used to control quality and quantity of propositions.
Thus, the comparison results of the criteria map against the learner's concept map can identify what the gap is based on the traditional concept map strategy.
The first group is component providing based on the criteria map which includes the label of concepts and the label of relations.
The criteria map represents a learning goal of a class in a concrete form, which is used to compare with the concept map of learners to find discrepancies based on the criteria map before the instructor gives the feedback to the learners (Trumpower & Sarwar, 2010).
This implies, however, the method's ability to normalize the criteria to a continuous scale, since the categorization in the criteria maps affects the spatial distribution of the alternatives.
In the Additional file 1, Overview of criteria considered for inclusion in criteria map, we list all criteria we considered for inclusion in our framework, and present a rationale for their inclusion or exclusion.
To ensure rigour, we selected the case studies using pre-defined criteria, mapped their characteristics systematically using a case study development framework, and analysed the research impact process of each case study using the RAPID framework for research-policy links.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com