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Both internal and external SAGE libraries are acceptable as input for the matrix data creator module.
The process performs the following steps: The matrix data generated by the matrix data creator module are uploaded via the matrix loader.
All the selected SAGE libraries are put into a pool for editing (deleting and clearing) and this file is then saved in a certain file format for further analysis by the matrix data creator module.
Figure 7 depicts the quiz creator module.
More detailed discussion about the quiz creator module is given in section " Customised Quiz Authoring".
The quiz creator module allows users to create customised quizzes with their own questions and images.
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In the cross-extraction module, the matrix data creator module-generated matrix data file is processed based on some filter and optional selection settings.
Readers can contact module creators with feedback or, because these are not immutable textbooks, to suggest edits.
Modifications were also made to the Neverwinter Nights 2 toolset with the intention of giving more options to module creators in the fan community and making it easier for players taking the role of the Dungeon Master.
The flow chart of this system (listed in Figure 5) including the modules for input, matrix data creator, cross-extraction, tag-to-gene, tag-to-library, and output are described in detail later.
We then used the Realigner-Target-Creator and Indel-Realigner modules of the GATK version 2.1.9 to refine alignments near all indels [ 7].
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