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Consequently, GPU methods are faster than conventional CPU methods and can provide an increase of one or two orders of magnitude [23].
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PSICOV is the fastest CPU method for small L, as its runtime is independent of sequence count.
In one other population, the genotype that first lost the AND function was not assigned a fitness by the test CPU (see Methods), so we excluded this case from our analysis.
Table 2 Average CPU time of methods Method Manual segmentation Watershed PolarSnake GaborFM Average CPU time (s) About 80 19.98045.49 10.80.
Our endeavor encompasses fundamental adaptions of formerly CPU-based methods in order to take the GPU-specific programming paradigms into account.
As a result, we show that our algorithm for similarity calculation is competitive to recently published CPU-based methods and can perform up to 380 million Tanimoto calculations per second on a current desktop computer.
A CPU testing method has uncovered 117 bugs on the Linux KVM hypervisor, which introduced security vulnerabilities to the VMs, and flaws in Intel virtualization technology that cause an differences in the observable behavior of code running on virtual and bare-metal servers [44].
Again, the more CPU intensive method (likelihood) scales better than either the distance or the parsimony codes given the same bootstrapped dataset.
Combining these optimization steps, a total speed-up of up to 16.87 has been observed compared to traditional CPU-based methods.
We ran the GPU version of CCMpred on an NVIDIA GeForce GTX 780 Ti, all CPU-based methods on an Intel Xeon E5 2620 six-core processor.
However, we noted that the numerical SVD routine used effectively two CPUs (see Methods for details about the test computer system) while the symbolic GJE routine used only one.
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