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On average, the AA pipeline computed complete annotation of a phage genome in 10 CPU hrs; manual inspection of the gene calls that were flagged as having potential issues required approximately one day per genome.
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80legs says it will allow developers to crawl up to 2 billion pages a day, with costs running $2 per million pages crawled and $0.03 per CPU-hr used for analysis.
Thus, we restricted our analysis to ca. 20 selected cross sections per genotype and time point (i.e., 208 cross sections in total, requiring ca. 800 hr of total CPU time), which gave statistically robust quantitative data.
The Barnacle runtimes were 10-14 hr with 100 CPUs, and 5-7 hr on 500 CPUs.
For these deeply-sequenced datasets the overall runtimes, including Trans-ABySS pre-processing, were ~65 hr with 100 CPUs and ~39 hr with 500 CPUs.
4) 3D classification & refinement using Relion: $28.89 (10.32 hrs at $2.80/hr) This cost reflects of price of $0.35/hr/instance on a 128 CPU STARcluster, which comprises eight r3.8xlarge instances.
For a mid-size locus (about 10,000 bp, 10 genes, promoters, and other elements) the typical processing time of a trajectory with 24 hr modeled duration will be between 3 and 15 minutes on a 3GHz Pentium-like CPU core, i.e., approximately hundredfold faster than the modeled real time.
CPU time for a dataset at 2.0-Å resolution with 199 residues in the asymmetric unit is 25 hr for each simulation using a 1.9 GHz processor.
Time difference: +7 hrs.
Dakovica Town -- 0230 hrs.
Flight time London-São Miguel 3 hrs.
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