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Currently, the average CPU time for small proteins is about 5 CPU hours for I-TASSER, whereas the CPU cost for the atomic ROSETTA modeling is 150 CPU days per target.
The majority of calculations completed within tens of seconds and the total required approximately 20 CPU days of computer time.
Using the first diverse conformer for each compound, the ST values for these 13.2 billion pairs were computed using ROCS [20] from OpenEye software, Inc., consuming ~419 CPU days in total, and stored.
In 2002, Folding@home used Markov state models to complete approximately a million CPU days of simulations over the span of several months, and in 2011, MSMs parallelized another simulation that required an aggregate 10 million CPU hours of computation.
For this data set 250,000 Gibbs iterations took approximately 5.0 CPU days.
Indeed, their computation is rather time consuming (481 CPU days for the human – mouse comparison according to [ 14]).
Similar(50)
Therefore, at a typical cost of $1 per CPU day, a complete mammalian genome can be assembled for about $1,000.
Using a cluster of 2.8 GHz Intel Xeon CPUs with 512 MB RAM we were able to assemble the equivalent of almost one-fifth of the entire human genome at a rate of roughly 3 Mb per CPU day.
For the whole SAR image of Figure 8, the computation of Figure 9 takes 15 h with optimization and 8 CPU against 18 days without optimization (30 times longer).
Intel's been ruling the CPU roost these days so it came as a surprise to me when their touted Atom platform got its ass handed to it by pretty much every measure.
A single case study required about 3 days CPU time on a Quad-core PC workstation.
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