Sentence examples for cp collection from inspiring English sources

Two different collections of gene sets were used, that can be downloaded from the MSigDB website http://www.broad.mit.edu/gsea/msigdb/index.jsp: MSigDB C2 CP collection, composed of pathways collected from various sources such as online databases, biomedical literature in PubMed, and knowledge of domain experts.

The AMP-IL and OP + CP collection had 162 alleles in common.

There are 1452 gene sets included in this canonical pathways collection (CP collection).

The enrichment of detected targets among gene sets from canonical pathways (CP collection in MSigDB) collection were calculated.

The enrichment analysis, performed by GENGEN on C2 CP collection, highlighted 115 pathways (p-value P ≤ 0.05) enriched in SNPs weakly associated to the trait.

In particular, the canonical pathways (CP) collection consists of 639 gene sets; MSigDB C5 collection, composed of 1454 gene sets derived from Gene Ontology (GO).

From the several datasets present in the database we downloaded the Canonical pathways (MsigDB C2-CP) collection that has been assembled from various curated sources such as KEGG [ 63], Reactome [ 64] and BioCarta [ 65].

Our analyses focused on 880 functional gene sets from the CP-C2 collection in the Molecular Signatures Database (MSigDB), version 3.0 [ 16].

Data collection (CP, ME, RP, IP).

CP assisted with collection and analysis of data.

TVN wishes to thank CP for beetle collection at GRA and Carolien Jacobs for useful advice.