We denote the upper bound of coverage by O(f) for any function f if a network coverage greater than f is not possible for flooding.
For our analysis, we consider that it is more interesting to take some solutions with a mutation coverage greater than a value ε, such as ε=94%%, and compare them to solutions with a 100%% coverage.
We decided to employ such a definition because it highlights assemblies that over-estimate the genome size (coverage greater than 100%).
Intriguingly, both ends of segment 1 (encoding PB2), the 3' end of segment 3 (encoding PA), and approximately 700 nt of segment 8 (encoding NS) showed significant abundant coverage greater than ×1000.
Positions with read coverage greater than 50 were ignored.
Libraries sequenced by pyrosequencing achieved a coverage greater than 80% (Table 6).
For statistical purposes, only SNVs that had coverage greater than seven overlapping reads were included.
These gene models were tested for RNA-seq coverage greater than 10X using Samtools [ 59].
The identified proteins had sequence coverage greater than 15% and Mascot scores greater than 200.
Only regions with a genomic coverage greater than 2 were kept for further analysis.
For all analyses, a transcript coverage greater than three probes was chosen.
