Sentence examples for coverage alignment from inspiring English sources

Such a contig would contribute its full length to the total length of viral contigs on the weight of a single low query coverage alignment event.

A surprising amount of the genome had bases with 0 coverage alignment for the Illumina libraries.

riboPicker categorizes rRNA-like sequences and provides graphical visualizations and tabular outputs of ribosomal coverage, alignment results and taxonomic classifications.

Coverage, alignment quality (Weighted sum-of-pairs score – WSoP [ 29]) and gap ratio are given in Figure 1.

riboPicker uses query sequence coverage, alignment identity and minimum alignment length thresholds to determine if an input sequence is an rRNA-like sequence or not.

Also, genes from PCC 7942 with homologs in at least 34 out of 35 complete genomes from cyanobacteria (having a coverage alignment of at least 75%) were also identified as belonging to the core.

The Structal method reported low coverage alignments on many more structure pairs when compared to DALI.

Pairwise alignments on chunked up genomes were performed by lastz, followed by chained alignments, and single best coverage alignments (nets) of the target genome (pig) with the UCSC tool chain.

The single best coverage alignments were cleaned up by synteny when the query genome assembly was chromosome based and by reciprocal best alignments between query and target when the query genome assembly was scaffold based.

The UCSC tool chain allows an automatic cleanup of the best single coverage alignments of the pig against other genomes in which alignments of gap-filling character has been deleted.

This was followed by a step of chaining and netting to produce a single-coverage alignment for each 2× assembly.