Sentence examples for counting datasets from inspiring English sources

Normalization of spectral counting datasets was performed to correct for any differences in overall protein abundances between samples and the Fisher's exact test used to assess the significance of differential protein expression [ 74].

Indeed, methods adapted to count datasets are not numerous and are highly focused on the Poisson distribution.

However, it is not well optimized for counting large datasets of next-generation sequencing reads, which contain many repeated k-mers.

Kenya's long-term aerial count datasets show that there has been a 50%to80%0% decline in numbers of the vast majority of wildlife species since counts began in the mid-1970s (Ottichilo et al 2001; Homewood et al. 2001; Western et al. 2006 2009; Ogutu et al. 2011).

We propose to extend its application with the use of the Pruned Dynamic Programming algorithm for count datasets such as outputs of sequencing experiments.

Briefly, normalisation factors calculated earlier were used to create DESeq count datasets for mRNA and pre-mRNA counts annotated with full experimental design (treatment × time) and dispersion values were calculated with default settings.

SERE may in principle be applicable to a broad range of read count datasets such as from CHIP-seq or for comparison of alternately processed read data such as the counts of a k-mer analysis.

To confirm that low counts did not result in inflated false discovery rate, we have simulated a series of count datasets based on the empirical per-gene total counts and coefficients of variation across samples as well as empirical sample size factors, which included no effect of experimental conditions.

We compared our segmentation with that corresponding to the SGD annotation through the Hellinger distance by fitting a negative binomial distribution on each segment and repeated this comparison with the other two algorithms able to process long count datasets: PELT [ 16] and Binary Segmentation [ 6], both implemented in the R package changepoint for the Poisson distribution.

To validate sequencing data with pair-barcode sequencing approach, we examined the correlation of raw read counts between dataset without barcode and datasets with 16 different barcode pairs.

We tested the developed method using an incomplete leatherback nest count dataset (2002) on Ya:lima po nesting beach in French Guiana, and tested it using a complete nest count dataset from 1987.