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Similarly, coding sequences were grouped by KEGG categories/pathways, which were then evaluated for over- or under-expression via read count strategies.
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One may also see our fragment oriented approach as somewhat reminiscent of the path count strategy of Kier and Hall [10 13].
This software uses a word count strategy based on categories of words like Protan [19] or Linguistic Inquiry Word Count [20] and a word combination strategy like the General Inquirer [21].
The R-squared values in the fractional count strategy were consistently close to 1 only in the case of the fractional count, and varied widely between 0 and 1 for the unique counts strategy.
The spectral count strategy is based on the positive correlation of protein abundance with sequence coverage and the number of identified MS/MS spectra [ 60].
The fractional count strategy is more similar to the true abundance as demonstrated by the smaller distance between these two in the multi-dimensional scaling plot.
Comparison with the scatterplots in Figure 2, which were obtained from simulating 20 M reads, also indicate that the unique count strategy is more affected by read coverage than the other two methods and performs poorly at lower coverage.
This software uses on the one hand a word count strategy based on categories of words such as PROTAN (Hogenraad et al, 1995) or Linguistic Inquiry and Word Count (LIWC) (Pennebaker et al, 2007) and on the other hand a word combination strategy such as the general inquirer (Stone et al, 1966).
There are models for children's informal knowledge of counting principles and informal counting strategies and their development into more formal and abstract arithmetic notions and procedures.
Crucially, interactivity attenuated the impact of a secondary task that taxed the phonological loop, which reduced participants' ability to rehearse interim totals or plan counting strategies sub-vocally.
Also included in the 21 PRO game are the basics of card counting, including naming books from which popular card counting strategies were gleaned, so that the dedicated player may seek out additional resources.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com