After sequencing, those reads sharing a bar code (i.e., corresponding to the same BAC) are grouped together and assembled in silico, and physical maps are constructed by identifying overlapping assembled or partially assembled BAC sequences [ 11].
Chatellier et al. demonstrated that, with four primers, neonatal invasive strains can be grouped into three predominant RAPD groups, corresponding to the same virulent MLEE lineages as found by van der Mee-Marquet et al. [ 26] fPFGE fragments and virulence gene probes, distribution among virulent vs. colonizing (ST III) GBS.
However, 2-way hierarchical clustering analysis highlighted different global mammary expression profiles between diets, showing that the gene expression profiles corresponding to the same diet were gathered by common groups of genes.
All treatments, dissections and analyses were performed in parallel for groups corresponding to the same time point (e.g., mice treated for 2 weeks with CIT and injected with NSD-1015 prior to sacrifice were dissected and analyzed in parallel with mice treated with SAL for 2 weeks and injected with NSD-1015 prior to sacrifice).
Results of this calculation provide a comparison of the variables between groups corresponding to the same bodyweight given as geometric mean at 10 kg in the interbreed comparison.
Starting from these data, a gene-level summarization was performed by grouping the probe sets corresponding to the same gene.
TFBS matrix families are defined as groups of TFBS weight matrices corresponding to the same or functionally similar transcription factors.
Specifically, we grouped together the different fingerprints corresponding to the same murine immune cell type but obtained from GeneSign by using different statistical methods.
