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Of these, BioChem, BioProt, and BioDNA are corresponding to the calculation of chemicals, proteins and DNAs/RNAs, respectively.
Likewise, BioCPI, BioDPI, and BioCDI are corresponding to the calculation of chemical protein interaction, DNA/RNA protein interaction, and chemical DNA/RNA interaction, respectively.
BioCCI, BioPPI, and BioDDI are corresponding to the calculation of chemical chemical interaction, protein protein interaction, and DNA/RNA-DNA/RNA interaction, respectively.
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All calculations were based on consecutive three-months-periods (quarter years), corresponding to the reimbursement-calculations for the Association of Statutory Health Insurance Physicians.
Calculations corresponding to the experimental values are marked as asterisks.
Selection of the codebook vectors corresponding to the indices T : A = F T. Calculation of the corresponding gains (least squares): g T = (A t A -1 A -1x (the remAining gains are set to zero).
For each classifier, 5 iterations of AUC calculation are performed (corresponding to the 5 possible classification values).
For the organelle calculations, only the metabolites corresponding to the particular organelle of Recon 1 were considered.
The free energy profile (Fig 4) for the hydrolysis mechanism was obtained by umbrella sampling calculation along the reaction coordinate corresponding to the minimum energy pathway.
The folds are different widths, corresponding to a calculation I made for each piece.
Also shown are the values of the shape parameter, K, corresponding to each BMDL calculation.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com