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The baseline entity annotation file had a tab-separated format with columns corresponding to the article identifier, the part of the document processed (T: title, A: abstract), the start and end characters offsets of the chemical, the text string of the chemical entity mention and the corresponding chemical entity mention class.
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For the publications, we searched the sections of the article corresponding to the modules.
(PDF 2276 kb) Additional file 2: The list of transcripts corresponding to the genes mentioned in the article.
The list of transcripts corresponding to the genes mentioned in the article and their expression levels is attached as an excel file.
The DDI corpus has 0 citations because the reference is from October 2013; Segura-Bedmar et al. (2011) is another reference that the author could include in the article corresponding to the first version of the corpus.
Moreover, the relations of the schema are: (i) "clarified by", a reflexive relation corresponding to the disambiguation pages of Wikipedia articles and which has the class 'Articles' as both domain and range, (ii) "in category" that connects every article to one or more appropriate categories.
We also made several attempts at designing primers for SDHA, and for the VHL region corresponding to the target sites in an article by Dammann et al., however these assays did not produce reliable results and were therefore excluded.
We used MEDLINE and Google Scholar to find journal articles corresponding to the research, and determined their evidence level.
Next, we used abstracts of retrieved journal articles corresponding to the research reported in the news story to categorize the study design and hence the study's likely level of evidence.
For classification, we set threshold values for each subtype and assign the corresponding label to the article if the associated subtype score is above a pre-set value.
We only analyzed in this article dialogue corresponding to the first session of training, which focused on the topic of force-and-motion (Newton's first and second law), because it was closest to the pre-test.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.
Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com