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Therefore, the different interaction kinetics that results from compact or non-compact explorations has profound implications in the understanding of the dynamic interactions and reactivity rates between TFs and corresponding regulated genes.
We extracted the transcription regulatory data contained in EcoCyc and established functional links between each transcriptional regulator and its corresponding regulated genes.
A genome-wide eQTL-plot displaying positions of eSNPs against those of corresponding regulated genes is shown in Supplementary Material, Figure S2.
To estimate ranges of cis-effects, we analysed the distribution of the physical distances between eSNPs and corresponding regulated genes if found on the same chromosome.
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Since AGP functions to catalyze the rate-limiting reaction in starch biosynthesis in plants, the results imply that genetic modification of the corresponding regulating enzymes along this pathway helps to increase yield in crop plants.
Indeed, many of the genes encoding the corresponding regulating enzymes (e.g., AURKB, SUV39H1, SETD8, etc).
These genes were selected for expression profiling based on the fact that they were predicted as the target genes of the above selected miRNAs for qPCR and also because the sequencing analysis demonstrated the expression of their corresponding regulating miRNA.
The types of genes and corresponding physiology regulated by cyclic diguanylate systems so far identified are motility, adhesion factors, fimbriae and biofilm formation.
Here we describe a number of novel p53-occupied genomic sites within the NGF-differentiated Rattus norvegicus neuronal PC12 cell line, and further identify corresponding genes regulated by p53 binding to these regions.
In contrast to miR159, miR319 and corresponding targets regulate embryonic patterning, jasmonate synthesis, leaf morphogenesis and senescence [ 6, 12, 13].
For this reason, I have dubbed the corresponding mechanism regulating spontaneous activity in the AL 'the gated spring model' of lateral activity control (Sachse & Galizia, 2006), even though that term is related to sensory neurons, whereas here I am looking at processing networks.
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