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This was a network that was given by an abundance filter of 0, a correspondence filter of 4, and a correlation filter of 0.9 (see Methods).
For the liver biopsy derived network we chose a correspondence filter of 5, abundance filter of 2, correlation filter of 0.8, with integrated PPIs (see Additional file 3: Table S2).
Thus, the modeling efforts reported here leveraged these data to further investigate whether the parameters used in our prior in vitro modeling activities (abundance filter of 0, correspondence filter of 4, and correlation filter of 0.9) were the best to help identify new targets.
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A filter was applied to remove correlation values with a number of comparisons below a threshold (correspondence filter).
Briefly networks were constructed by filtering differential regulation data using an abundance filter, j, and constructing a correlation matrix where only pairs of proteins with k or more valid comparisons were retained (correspondence filter).
Correlation values with a low number of comparisons are removed (set to 0) according to the correspondence filter, where a single comparison is counted if abundance ratios are observed for the same condition for the pair of proteins being considered.
It uses results of the space/spatial-frequency (S/SF) analysis in real-time processing of nonstationary 2D signals and is based on the correspondence of the filter's region of support to the local frequency (LF) of the filtered 2D signal and on the S/SF analysis-based LF estimation.
UV Filters The simplest filter of the three is the UV filter.
where we assume that the correspondence between filters and transmitted sequences has already been defined.
Even after his recovery, Sarah opened his correspondence and filtered the letters Marlborough received, lest their contents precipitate another stroke.
This paper examines three issues related to the filtering process: representational correspondence, loss of precision and information dilution.
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