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A filter was applied to remove correlation values with a number of comparisons below a threshold (correspondence filter).
This was a network that was given by an abundance filter of 0, a correspondence filter of 4, and a correlation filter of 0.9 (see Methods).
For the liver biopsy derived network we chose a correspondence filter of 5, abundance filter of 2, correlation filter of 0.8, with integrated PPIs (see Additional file 3: Table S2).
Briefly networks were constructed by filtering differential regulation data using an abundance filter, j, and constructing a correlation matrix where only pairs of proteins with k or more valid comparisons were retained (correspondence filter).
Thus, the modeling efforts reported here leveraged these data to further investigate whether the parameters used in our prior in vitro modeling activities (abundance filter of 0, correspondence filter of 4, and correlation filter of 0.9) were the best to help identify new targets.
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Automatic Control, vol. AC-25, no. 2, pp. 284-285, April 1980 (correspondence). 66. "Filter-Length Word-Length Tradeoffs in the Design of FIR Digital Filters," (with D. Kodek), IEEE Trans.
Even after his recovery, Sarah opened his correspondence and filtered the letters Marlborough received, lest their contents precipitate another stroke.
It uses results of the space/spatial-frequency (S/SF) analysis in real-time processing of nonstationary 2D signals and is based on the correspondence of the filter's region of support to the local frequency (LF) of the filtered 2D signal and on the S/SF analysis-based LF estimation.
In correspondence with the filtering criteria for the time-course analysis, we excluded genes with a log expression difference across time smaller than 1.25 and correlation between replicates smaller than 0.75.
We thank Jimmy Eng for useful correspondence on the spectral filtering strategy of SEQUEST's XCorr.
This approach allows us to gain new insight in the correspondence between RS codes and filter banks.
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