Sentence examples for correlation linkage from inspiring English sources
These genes were then organized based on the gene ontology annotations for angiogensis, cell proliferation and chemotaxis using dChip (distance metric: correlation, linkage method: average).
Hierarchical clustering of standardized array data was performed using dChip (distance: correlation, linkage: centroid) based on the gene ontology annotations for angiogensis, cell proliferation and chemotaxis [24].
Clustering parameters were distance:correlation, linkage:average, row centered:by genes.
The P × P matrix X ⊤ M Z X in (3) and (5) can be regarded as a map of the estimated correlation (linkage disequilibrium) between markers.
More importantly, when we investigate multiple loci simultaneously, it is crucial to take the correlation (linkage disequilibrium, LD) between the local ancestries into consideration.
This method treats individual tests as independent and thus is very conservative for data for which the correlation (linkage disequilibrium) between tests (SNP) is high; the linkage disequilibrium (r) between adjacent SNP in the Finnish Landrace population is 0.43 [ 11].
The parameter settings were: 'Distance Measure = Correlation' and 'Linkage = average'.
Finally, we included a measure of the correlation between linkage disequilibrium and the distance between mutations along the sequence.
Genes that were expressed at significantly different levels between patients and controls were analyzed by supervised hierarchical clustering (uncentered correlation, complete linkage) [25] to visualize the correlation of co-expressed genes in Treeview (available at http://rana.lbl.gov/EisenSoftware.htm).htm
Expression values for the specific NZM signature genes were extracted by using the SelectFeaturesRows GenePattern module and submitted to hierarchical clustering as log-transformed median-centred data (Pearson correlation, average linkage).
If the number of core probes is greater than 11: We apply hierarchical clustering to the 11-tissue data for all core probes (distance metric: 1-Pearson correlation; average linkage clustering).
