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To normalize the LRR, we used the default GC correlation file (GC Reference bos_taurus_UMD3.1.gc_digest.dsf) to correct for the waviness contributed by GC content.
If pairwise phenotype correlations are exhaustively calculated and saved in tab-delimited matrix form, the absolute value of the correlation coefficients can be plotted using PheWAS-View by using the -C correlation file.
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When comparing raw qPCR expression with sequencing data, we found good abundance correlations (file S1).
Fig. 10 Correlation between file reference and file size.
The third traffic characteristic that typically affects cache performance is the correlation between file reference and file size.
Regarding the correlation between file reference and file size, we observe that in the workloads we have studied there is no strong correlation between the size of a file and the number of requests it receives.
In order to validate these data, qRT-PCR was performed on 10 representative genes (r = 0.89 by Pearson correlation; Additional File 1; Additional File 2, Figure S1 A).
The adequacy of LRU for this traffic also benefits from a combination of a less concentrated distribution of popularity among files and low correlation between file sizes and popularity, which are the characteristics leveraged by other object replacement policies.
Subsequently, we investigated whether the changes in sense and antisense transcript levels between times points are correlated and observed no global correlation (Additional file 5: Figure S3).
A Pearson correlation (Additional file 5: Figure S1A) and Euclidian distance (Additional file 5: Figure S1B) were used as metrics, and an average linkage clustering described the data.
We observed that there was an inverse correlation (Additional file 8: Figure S4B (rank correlation −0.954) and Additional file 9: Figure S5 (rank correlation, −0.959)) between caspase activity and the rate of cell increase (determined as AUC over time).
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