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We also presented a set of objective (i.e., assembler-independent) correctness scores to evaluate the results.
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To incorporate this notion in the evaluation metric, nDCG follows a graded correctness score.
Correctness scoring was adjusted according to the history of cancer of each subject.
Figures 3a and 4a represent the distribution of correctness score of the reads of E. coli and B. cereus, respectively.
The MinimalProductQsta program takes MinimalProductQ program's output as input and generates the distribution of correctness score.
MI-GRAAL is capable of solely topological network alignment and its edge correctness score was used as a proxy for network similarity measure to generate the distance matrix for the phylogenetic tree.
The MinimalQFilter program allows users to set a threshold for selecting the reads with MQV above the threshold; similarly, the PQFilter program is for selecting the reads with correctness score above a given threshold.
The result generated by MinimalQ or MinimalProductQ program is a list of records, and each record contains a read followed by its corresponding minimal quality value (MQV) or correctness score, respectively.
We denote the product of P c (i) as ProductQ and calculate ProductQ * 100 as the ProductQ score, For de Bruijn graph based assemblers, there are L-k+1 k-mers for a read of length L. The read's correctness score is defined as the minimal value of its k-mer ProductQ scores.
Hints containing partial correctness feedback scored significantly higher than those without it (Mann Whitney, p < 0.001).
Activities were later scored for correctness, but this score did not influence student grades.
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CEO of Professional Science Editing for Scientists @ prosciediting.com