'correctly aligned' is correct and can be used in written English.
For example, "This document was carefully formatted and its content was correctly aligned."
On average, in the 10 25% sequence identity range, alignments are improved by 28 correctly aligned residues compared with alignments made using FUGUE's default substitution tables.
Finally, pairwise LCBs in the predicted alignment lacking any correctly aligned nucleotide pairs are False Positive (FP).
In this example, 9 residues are correctly aligned over a total alignment length of 10 residues.
Table 6 gives the number of correctly aligned residues across all the alignments in each sequence identity bracket.
In terms of correctly aligned RI pairs, our multi-view alignment reaches a 99.7% performance.
The reference-dependent accuracy is defined as the percentage of correctly aligned positions judged by the reference alignments.
The alignment precision is the ratio of correctly aligned pairs to aligned pairs and is defined as (N∩S /N.
The alignment accuracy is calculated as the percentage of correctly aligned positions by comparing to the gold standards generated by the TM-align program (see Table 1).
Partially correct alignments (where parts of a multiword expression are correctly aligned) are ignored.
The given measure assesses the goodness of the alignment A based on the relative proportion of correctly aligned nodes.
Each alignment can be divided into two segments: (i) correctly aligned and (ii) incorrectly aligned or extended (Fig. 1a and Supplementary Fig. S1).
