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Branch length inference is very poor with undercorrection, decreases to a level close to the no-error case with correction, and then increases only slightly with overcorrection; but this apparently correct branch length inference is associated with increasingly poor topology inference.
The coach is only trying to choose the correct branch on the tree, the one that is most likely to get the most victories.
Branch Networks under pressure In the US last year branch growth was non-existent, well to be technically correct branch growth was 0.39%, but that is the lowest it has been in 14 years and the trends are clear - there will be no more branch growth in the USA.
Thus, a method that had very few matching branches would not necessarily perform poorly in this respect (i.e., if it only inferred one correct branch, with the correct branch length, it would have zero variance and zero mean, even though it would likely have large FP and FN).
One important but expected finding is that increasing substitution rate resulted in a significant increase in error (both topologically and in terms of inferring the correct branch lengths) in all methods.
Also, due to the poor performance of all methods on the medium and high recombination sets, particularly in inferring correct branch lengths, we included measure 6 above to help distinguish how well the individual branch length estimates compared to the true branch lengths.
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We shall have to take pains in each instance to ensure that the correct branches for the roots are used.
There is only one correct branching order, but the students may represent their trees in different ways; this provides an opportunity to illustrate how different representation of the same data can contain identical information.
UNC5B, also upregulated during the most active growth phase of the CAM, is expressed in ECs and its interaction with its ligand netrin-1 (encoded by NTN1) is essential for correct branching of the vasculature in mice and zebrafish [50].
The quartiles of the DF distribution illustrate the extent to which topologically correct branches are typically stretched or shrunk.
However, the proportion of correct branches obtained from the signature is not as high as for the distance method.
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