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The experiments were conducted on a four core workstation.
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OpenMP parallelization yields further speedup of 2 12 on a 16-core workstation, while OpenMP/MPI version demonstrates a speedup of 11.5 16.5 on a computer cluster with 32 nodes used.
On-line processing can be implemented either on the Data Acquisition Board or on the multi-cores workstation depending on the complexity of the algorithms.
Computer simulations were run under Redhat Linux on a Dell M4600 multi-core workstation.
All computations were performed on an Intel 2.4 GHz, quad-core workstation with 8.0 gigabytes of memory.
A single multi-core workstation without a batch queuing system (including an extreme case of single-core machine).
A swept source optical coherence tomography (SS-OCT) system and a PZT motor controller are connected to a quad-core workstation (Dell, T7500).
We used a quad-core Workstation (DELL, Precision T7500) to obtain the distance information from the CP-OCT signal and deliver commands to the linear motor through a motor driver.
This approach makes it possible to accurately align hundreds of millions of long reads to a mammalian-sized genome in only a few hours on a standard multi-core workstation with only a modest amount of RAM installed.
The number of cluster (K) was tested for K = 1 to K = 12, with ten replicates for each value of K. Due to the long computation it requires, this analysis was performed on an 8-core workstation using the R package ParallelStructure [ 97] to distribute parallel runs of STRUCTURE on multiple cores.
The data in Table 4 were obtained from an assemblage of over 900 million configurations in Monte Carlo simulation and 500 ps of molecular dynamics simulation for a cubic system containing 267 water molecules; the latter took about 24 h (1 fs integration step) on an eight-core workstation, while about 7 million configurations can be executed in Monte Carlo sampling.
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