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Here, we evaluated the active core sequences using B133 deletion peptides.
Importantly, OsIRO2 itself possesses multiple IDEF1-binding core sequences in its promoter region and is positively regulated by IDEF1 [27].
OsIRO2 also affects the expression of Fe deficiency-inducible transcription factor genes possessing OsIRO2-binding core sequences in their promoter regions (Ogo et al. 2007).
OsIRO2 also affects the expression of some Fe-deficiency-inducible transcription factor genes that possess OsIRO2-binding core sequences in their promoter regions [44].
OsIRO2 itself harbors multiple IDEF1-binding core sequences in its promoter region and is regulated by IDEF1 (Kobayashi et al. 2007).
The major core sequences in this set were TTAA and CTAG with the consensus YTAR.
The DNA binding motif of REX1 contains the core sequences of GCAGCCAT or GCCATTA [34].
Region E2 displays most sequence diversity, whereas 5_UTR and CORE sequences are more conserved [8], [9].
The binding sites overlap and flank the promoter core sequences of P1 and P2, respectively.
These core sequences are necessary but not sufficient for full regulatory potential.
In this study, our aim was to predict whether a given sequence belongs to nucleosomal core sequences or not.
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