Exact(1)
Of the remaining 10 common core haplotype groups, all ancestral at rs1426654, eight clearly have their origins in Africa.
Similar(59)
According to the annotation of polymorphisms, haplotype groups were determined for a core set of starch biosynthesis/degradation genes (Table 2).
REHH is defined as the ratio of the EHH of the tested core haplotype to the EHH of the grouped set of core haplotypes at the region not including the tested core haplotype.
This group overall has the most even representation of three core haplotypes A, B, C and their satellites, plus further three, rare haplotype groups distinct from the dominant ones.
This haplotype, present at a frequency of 0.15, had an REHH of 2.7 at −68.3 kb from the core region which is supportive of the suggestion of positive selection for CYP2C19* 2. Since our genotyping data did not extend further than −68.3 kb from the core haplotype it was not possible to examine REHH over longer stretches of the genome in the Gambian study group.
Three haplotype groups (japonica-haplotypes I, II and indica/aus-haplotype) represented the largest proportion of DPRK germplasm and contained both landraces and improved varieties.
Excluding W1 and admixed individuals, there was good correspondence between chloroplast haplotype groups and subpopulations.
The EHH values of core haplotype (3), AGA, decayed more slowly than the other core haplotypes, indicating haplotype (3) may have been under positive selection.
The core haplotype was then the largest haplotype in the core haplotype region.
For each core haplotype the relative EHH (REHH) was calculated.
We find three closely related haplotype groups.
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