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Additionally, 6 avian isolates and 4 environmental isolates that are representative of the core genetic groups and of the different reassortant sub-groups were included in the analysis (Additional file 1: Table S1).
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Molecular coancestry matrices comparing all pairs of individuals within the core collection and within the different genetic groups identified above were calculated using all 448 microsatellites using MolKin v.3.0 [ 73].
Comparison of genetic diversity index among the 3 genetic groups inferred within the analysed core collection (see Material and Methods) indicated that despite K3 sub-population included a smaller number of haplotypes than the two other K1 and K2 sub-populations; this presented a high number of segregating sites and π and θ polymorphism indexes (Table 2).
The program, MSTMap [ 39] was used to build a core genetic map including all codominant markers using the cut-off p-value of 10-12 for clustering markers into linkage groups.
The remaining ORFs grouped into class 2 OGs (C2OGs) depict gene families drifting or sporadically lost from the core genetic repertoire of the rickettsial ancestor [32] or genes acquired laterally (Figure S2).
representing other genetic groups.
Diversity studies of DPRK rice germplasm revealed two genetic groups.
It can successfully detect novel viruses, including those arising from the reassortment of 'core' genes, and the assay has the ability to differentiate among genetic groups (lineages or clades) within the same virus subtype.
OM and CP digestibility and hormones were affected by genetic group or genetic group × treatment interaction.
The three Neisseria species groups represent coherent biological and genetic groupings which appear to be maintained by low rates of inter-species horizontal genetic exchange within the core genome.
Core Mothers lead groups of mothers.
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