Sentence examples for copies were aligned from inspiring English sources

The remaining copies were aligned into contigs.

A 201 bp minisatellite sequence, represents 8206 copies in the WGS data; 8016 copies were aligned into pseudomolecules.

Finally, we chose 3 new repeat sequences, designated soybean repeat sequence1 (SBRS2), SBRS2 and SBRS3; their sequences and designed primers are in Additional files 1 and 2. A 48 bp minisatellite sequence, represents approximately 131,000 copies in the WGS data; 123,000 copies were aligned into 13 pseudomolecules, including Gm1, 2, 3, 5, 11, 12, 14, 15, 16, 17, 18, 19 and 20.

For each type of IS element, complete and partial IS copies were aligned with ClustalW.

Sequence copies were aligned using MAFFT (http://www.ebi.ac.uk/Tools/msa/mafft/) and viewed in BioEdit (48) to determine which sequence contained the bases that are at odds with the rest.

After removal of adapter sequences, reads >15 bp and with at least 2 copies were aligned, allowing 2 mismatches, to miRBase (Release 19), a database of human non-coding RNA downloaded from Ensembl using Biomart [ 58] and the human genome (hg19).

In one of the crystal forms the channels of at least 3 copies are aligned – if the DNA is in there – it might show fiber scattering along that axis.

The reading frames of each species copy were aligned, and primers (supplementary table S6, Supplementary Material online) were selected to encompass homologous regions of each transcript.

Phylogenetic relationships were determined from these single-copy orthologs and were aligned with MAFFT [ 71].

B: the coding sequence and UTRs of each copy from the array were aligned.

For such multi-copy genes, the paralogs were aligned and both the allele-specific SNP and paralog-specific variations (PSVs) were marked.