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The insertion date of the truncated copies was computed as follows: the nucleotide divergence between the truncated copy and the best matching complete copy was computed, and compared to the nucleotide divergence existing between the two LTRs of the complete copy.
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The decoded value of the th integer transform coefficient in the th copy is computed as (7).
The number of copies in Triticeae was computed by Southern blot analysis and slot blotting techniques by using cDNA of Revolver as the probe.
A histogram of the allele-specific Allele B frequency information for the markers on each autosome with copy number loss was computed.
A log10 copy number for each gene was computed by averaging the smoothed and segmented log10 ratios for each probe located in within the gene region.
The distribution of the frequency of words of length L (L = 10 residues) in each amino acid sequence was computed for both copies of the same gene.
This was computed by obtaining copy number states for each of the windowed probes and determining the number of those assigned as altered in copy number against the total number of windowed probes.
Copy number alteration (CNA) for each SNP was computed as log2-ratios of each sample and a reference dataset.
Distribution of amino acid sequence identities between pairs of homologous proteins was computed to evaluate the divergence between paralogous (tandem arrayed and dispersed) and orthologous gene copies.
RAS was computed daily.
A gene copy number is computed by counting the number of reads mapped to each known transcript, then computing the median number of copies for each gene over all of its respective transcripts.
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