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For nascent gene copies shared by multiple Drosophila species, 44% and 34% are dispersed and tandem repeated duplicates, respectively.
However, the songbird-specific copy and one of the copies shared by passerines are truncated, lacking most of the 5' half of the gene.
Accordingly, most populations of LTR retrotransposons showed intermediate KST values indicative of similar TE copies shared among species together with species-specific groups of copies.
All seven introns present in the class 1 copies shared a GGT motif at the 5' splice site across all the classes.
By contrast, GarfieldN1_BM seems to have experienced a recent burst transposition in the silkworm as all copies shared more than 91% identity to their ancestral sequence (data not shown).
A large minority of the copies shared the same haplotype, indicating that the D21Z1 alpha satellite repeats have been relatively stable over time, or, alternatively and more likely, that the formation and fixation of this locus occurred relatively recently.
Similar(53)
SDs are segments of DNA >1 kb in length that occur in two or more copies per haploid genome, with the different copies sharing >90% sequence identity [37].
The four AKR1B copies share 80-92% amino acid residues.
During our analysis, we revealed for Hopi/Osr27 and Osr8 the presence of truncated copies sharing a deleted region compared to the reference copy.
These three copies share 89%, 98% and 78% nucleotide sequence identity, respectively, compared to the closest grape genomic DNA contig sequence (Accession AM475392.1).
From our analysis of Hps gene structure, at least three pieces of evidence suggest that most of the Hps copies share a high degree of sequence identity.
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