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These kelch motif BnACBPs were compared with six copies of putative kelch motif BnACBPs found in the database.
However, as described for other bacteria, both Xanthomonas genomes present extra copies of putative ATP-dependent DNA ligases (two in X. axonopodis and three in X. campestris).
Since low copies of putative homologous genes of AtDMC1, AT4G40020 and AT2G21640 seem to exist, exploring their correspondent promoter sequences in other species should be quite straightforward.
This region is enriched with mobile genetic elements and has two copies of putative HipA protein, in addition to another HipAB locus elsewhere.
Using ReDoSt, we identified 4310 copies of putative DIRS1-like elements distributed among 32 diverse species out of the 274 well-sequenced genomes tested (Table 2).
However, two non-identical copies of putative genes, termed cysNC1 and cysNC2, were detected that appear to be fusions of cysN and cysC.
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D. clintoniana's two additional homeologs fell with its inferred paternal progenitor, D. goldiana, and with the paternal copies of its putative mother, D. cristata, and D. cristata's putative father, D. ludoviciana.
In PAa, CHPmethylase (PA0043 and paralogues) is the dominant methylase with 12 copies, although 7 copies of a putative methylase (PA0253 and paralogues) were detected, of which 5 appear to be fragments of the putative full-length protein.
The rice genome has a total of four copies of the putative gene encoding the α subunit of protein kinase CK2 (http://rapdb.dna.affrc.go.jp/).jp/
We have yet to identify the parent copies of these putative processed pseudogenes.
Moreover, in both cases six copies of the putative recognition sequence are used.
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