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The phylogenetic miss positioning we observed for four genes copies may be explained by gene conversion.
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Given the single copy nature of the probes in previous Southern analysis, the finding of two or three independent contigs per single copy probe may be explained by too little overlap of positive BAC clones in the area carrying the respective genes thus not allowing FPC to build single contigs.
The variability in transgene transcript levels in this analysis may be explained by position effects [ 46], gene copy number [ 47] and the varying ratios of heterozygous and homozygous T2 plants included in the pooled samples analysed.
The observation that the slow copy is evolving at the preduplication rate may be explained in two ways.
The lower HPV DNA copy number in the women under 45 years old may be explained by infection of multiple HPV subtypes or infection by high risk HPV 16 subtypes.
This miRNA alone accounted for ~48% of the pyrosequencing reads, a result that may be explained, at least in part, by the high copy number of its gene (6 copies in various chromosomes).
The discrepancy between blackbirds and great tits may be explained by species differences in song-copying behaviour or distinct variation in singing style.
As an example from higher plants, possible loss of the plastid genome in the parasitic plant Rafflesia was reported (Molina et al. 2014), although this may be explained by a dramatic reduction in plastid DNA copy number and gene content.
This pattern of sequence divergence may be explained by the release from selective constraint for these redundant copies.
The bias of deleterious SNPs in CNV regions may be explained either by a sequence duplication resulting in pseudogenes or by gene duplication where one copy harbours a deleterious mutation while the other retains the gene function.
The phenomenon may be explained as follow.
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