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Full-length RLC_ egMax_1 copies correspond to ~1%% of E. grandis genome.
b Partial copies correspond to fragments of the putative IS element.
Hence, 23% of copies correspond to several Miniature Inverted-repeat Transposable Elements (MITE) sublineages, the first ever described in Drosophila for mariner.
Similar(57)
PERV RNA expression levels, measured as gag RNA copies, corresponded to those of proviral DNA (compare Figure 1C and 1D).
All copies corresponded to different insertions.
The states defined by the PennCNV algorithm were generally similar to those defined by PARTEK so that (state 1) 0 copies, corresponded to homozygous deletions, (state 2) 1 copy, corresponded to LOH with deletion, (state 5) 3 copies single copy duplication defined in PARTEK by CN gain with LOH, and (state 6) 4 copies double copy duplication, also defined in PARTEK as CN gain with LOH.
The missing two copies corresponded to those inherited from B. oleracea (Bol027060 and Bol005980) given that they were not clearly specified from the database.
Mtr30/MTCOPIA2 and Mtr32/COP3 were quite active in the genome and their copies corresponded to more than 200 and 109 Kb sequences, respectively.
Almost a quarter of the copies corresponded to 27 different MITE sublineages from 14 MLE lineages, 17 from the drosophila subfamily and 6 from the mauritiana subfamily, suggesting that these subfamilies were particularly likely to generate such shorter elements.
At least two lines for each TE copy correspond to the upstream and downstream genes closest to each TE.
The first copy corresponded to the initial insertion of the phage in dRS3 repeats localized between NMA1791 and NMA1801 (gpm).
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